Digital images (Linear shift-invariant systems)
An introduction to signals and systems, sampling theory, filtering in spatial and frequency domain.
First presented at the Image Processing basics course organized by the Microscopy Network Basel in November 2014 (last update: November 2016).
This is a short introduction to optics, image formation, and deconvolution that I give before an hands-on course on the Huygens Remote Manager (last update: November 2016).
Introduction to ImarisXT and IceImarisConnector
Extending Imaris with custom MATLAB functions:
Extract from Imaris Open Launch talk:
Biological Image Processing Summer School 2010
Focused on ImageJ, MATLAB and Cell Profiler
Introduction to MATLAB programming
- Session 1: First steps in MATLAB (exercise solutions)
- Session 2: Data types and structures (exercise solutions; MATLAB code)
- Session 3: Object-oriented programming and external interfaces (add-on; MATLAB code)
- Session 4: Visualization and GUI programming (MATLAB code)
Introduction to statistics with MATLAB
This course had its own introduction to MATLAB, but I recommend using sessions 1 and 2 (and maybe even 3) from the “Introduction to MATLAB programming” course above.
Source control with Subversion
Quick introduction to source control using subversion.